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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17374809_17375850_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17374809 - 17375850
Intron Length:
1042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGAAC
5'SS Class:
major
3'SS Sequence:
CTTATTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
AACTCCTTATTC
Flanking Amino Acid:
KSAGKVKEEQGPSKSEKKMK
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71
34.3
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
83.2
0.75
0.8
77.5
31.2
Minor 5ss
27.2
-2.6
3
33.5
42
Minor BPS
62
0.36
1.6
65.8
40.1

Associated Gene:

Gene:
PARP1
Ensembl Gene ID:
ENSAPLG00000014039
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014776
17344636 - 17388371
43736