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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17375920_17376726_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17375920 - 17376726
Intron Length:
807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTATTCTCATTT
Flanking Amino Acid:
KGGAAVDPDSGLEDSAHVFE
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.2
28.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85
0.79
0.6
81.4
23.7
Minor 5ss
29.1
-2.4
3.2
36.8
41.9
Minor BPS
50.6
0.1
1.8
69.55
41.5

Associated Gene:

Gene:
PARP1
Ensembl Gene ID:
ENSAPLG00000014039
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014776
17344636 - 17388371
43736