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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17376860_17378223_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17376860 - 17378223
Intron Length:
1364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCACTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATGT
Flanking Amino Acid:
LQLLEDDRESRYWVFRSWGR
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.1
0.63
0.8
73.5
31.3
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
53.1
0.17
2.1
79.56
42.7

Associated Gene:

Gene:
PARP1
Ensembl Gene ID:
ENSAPLG00000014039
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014776
17344636 - 17388371
43736