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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17378420_17379929_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17378420 - 17379929
Intron Length:
1510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTATTTCTAATA
Flanking Amino Acid:
FYPLEIDYGQDEEAVKKLTV
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.1
76.2
39.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83
0.74
0.7
76
32.6
Minor 5ss
41.8
-0.9
3.2
57.8
46.8
Minor BPS
53.8
0.12
1.6
63.86
37

Associated Gene:

Gene:
PARP1
Ensembl Gene ID:
ENSAPLG00000014039
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014776
17344636 - 17388371
43736