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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17381336_17382246_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17381336 - 17382246
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTGTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTCTTTAATG
Flanking Amino Acid:
AYSILNEVQQAVSDNGSESQ
Intron Amino Acid Position:
697

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.8
38.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
83.5
0.75
0.8
81.1
30.9
Minor 5ss
37.5
-1.4
3
47.8
47.9
Minor BPS
83.7
0.92
1.1
82.98
31.5

Associated Gene:

Gene:
PARP1
Ensembl Gene ID:
ENSAPLG00000014039
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014776
17344636 - 17388371
43736