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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17382905_17383590_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17382905 - 17383590
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGAA
5'SS Class:
strong_major
3'SS Sequence:
TACCTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTTACC
Flanking Amino Acid:
NYEKLRTDIKVVDKDSEEAK
Intron Amino Acid Position:
781

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
33.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.2
0.75
0.8
80.6
31
Minor 5ss
27.9
-2.5
3.5
37.1
47.5
Minor BPS
62.3
0.37
1.9
76.16
40

Associated Gene:

Gene:
PARP1
Ensembl Gene ID:
ENSAPLG00000014039
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014776
17344636 - 17388371
43736