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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17386323_17387827_F

Intron Information:

Intron Rank:
22
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
17386323 - 17387827
Intron Length:
1505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ACATTCTTCCTAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TGTTCCTTAACA
Flanking Amino Acid:
GINDTCLLYNEYIVYDVAQV
Intron Amino Acid Position:
966

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.2
56
43.9
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
70.1
0.45
0.9
62.3
39
Minor 5ss
94.2
1.49
0.8
86.6
30.5
Minor BPS
91.5
1.3
0.8
92.6
26.7

Associated Gene:

Gene:
PARP1
Ensembl Gene ID:
ENSAPLG00000014039
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014776
17344636 - 17388371
43736