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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17407911_17409774_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17407911 - 17409774
Intron Length:
1864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTACA
5'SS Class:
major
3'SS Sequence:
TTTTACTGTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTCCTTTATTT
Flanking Amino Acid:
RNQKVAMVPQKFNTTMPTPD
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
71.8
39.9
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
77.6
0.62
0.9
73.2
37
Minor 5ss
40.5
-1.1
2.8
52.7
43.9
Minor BPS
68.7
0.66
1.5
85.14
35.6

Associated Gene:

Gene:
LIN9
Ensembl Gene ID:
ENSAPLG00000013627
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014263
17391968 - 17430163
38196