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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17412538_17416754_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17412538 - 17416754
Intron Length:
4217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTC
5'SS Class:
strong_major
3'SS Sequence:
AATTGTATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
TTTTACCTAATT
Flanking Amino Acid:
KIRRLMGKPRRCSSAFFEEE
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
84.2
27.6
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
70.4
0.46
1
63.8
41.8
Minor 5ss
44.8
-0.6
2.8
61.7
43.1
Minor BPS
68.4
0.66
1.8
90.03
33.7

Associated Gene:

Gene:
LIN9
Ensembl Gene ID:
ENSAPLG00000013627
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024400
17391968 - 17430163
38196
ENSAPLT00000014263
17391968 - 17430163
38196