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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17416913_17418074_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17416913 - 17418074
Intron Length:
1162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTCC
5'SS Class:
strong_major
3'SS Sequence:
TGTATCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
LPLVIGTKVTARLRGVHDGL
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.1
75.8
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80
0.67
0.8
77.8
36.5
Minor 5ss
47
-0.3
2.5
62.8
41.8
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
LIN9
Ensembl Gene ID:
ENSAPLG00000013627
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024400
17391968 - 17430163
38196
ENSAPLT00000014263
17391968 - 17430163
38196