About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17419595_17424513_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17419595 - 17424513
Intron Length:
4919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTGTTCTAAAAA
Flanking Amino Acid:
GFPVEFLIQVTRLSKILMIK
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
85.1
0.79
0.8
84.6
30.4
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
60.1
0.31
1.8
71.86
40.4

Associated Gene:

Gene:
LIN9
Ensembl Gene ID:
ENSAPLG00000013627
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024400
17391968 - 17430163
38196
ENSAPLT00000014263
17391968 - 17430163
38196