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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17424595_17427861_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17424595 - 17427861
Intron Length:
3267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTGCATTAATT
Flanking Amino Acid:
REMNTEAEKLKSYSMPIGIE
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
82.4
29.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.9
0.69
0.8
75.8
32.8
Minor 5ss
34.1
-1.8
3.2
46.4
43
Minor BPS
67.6
0.63
1.7
83.58
37.4

Associated Gene:

Gene:
LIN9
Ensembl Gene ID:
ENSAPLG00000013627
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024400
17391968 - 17430163
38196
ENSAPLT00000014263
17391968 - 17430163
38196