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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17427988_17428260_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17427988 - 17428260
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTGTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTCTTTATTT
Flanking Amino Acid:
LHKVQQYCYELAPDQGLQPA
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.5
0.71
0.9
76.4
37.6
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
69.4
0.69
1.5
83.14
39

Associated Gene:

Gene:
LIN9
Ensembl Gene ID:
ENSAPLG00000013627
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024400
17391968 - 17430163
38196
ENSAPLT00000014263
17391968 - 17430163
38196