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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17455085_17456105_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17455085 - 17456105
Intron Length:
1021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGGC
5'SS Class:
major
3'SS Sequence:
TTATACCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTCTTATACCC
Flanking Amino Acid:
GFFDVLGNDRRKEWAALGNM
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.6
37.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
72.3
0.5
0.9
63.1
39
Minor 5ss
30.1
-2.3
3.4
41.8
45
Minor BPS
46.6
-0.2
1.8
59.68
39.8

Associated Gene:

Gene:
ACBD3
Ensembl Gene ID:
ENSAPLG00000013267
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013825
17449138 - 17464192
15055