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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17456247_17457496_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
17456247 - 17457496
Intron Length:
1250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
AAGAAAAACGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTACAAAAAGA
Flanking Amino Acid:
KIEKEEQEKKRREEEERLRR
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
46
-0.2
1
30.9
34.7
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
42.5
-0.5
2.3
62.35
43.3

Associated Gene:

Gene:
ACBD3
Ensembl Gene ID:
ENSAPLG00000013267
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013825
17449138 - 17464192
15055