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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17457581_17458698_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17457581 - 17458698
Intron Length:
1118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CTGTTCGTAATC
Flanking Amino Acid:
EEERLRMEQQKQQIMAALNS
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
75
35.1
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
71.3
0.48
0.9
65.7
33.6
Minor 5ss
32.3
-2
2.7
37.1
33.8
Minor BPS
53.5
0.09
2
64.88
41.9

Associated Gene:

Gene:
ACBD3
Ensembl Gene ID:
ENSAPLG00000013267
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013825
17449138 - 17464192
15055