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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17461935_17462980_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17461935 - 17462980
Intron Length:
1046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTATCCTTATTC
Flanking Amino Acid:
ESSDDEDEEEENTSSEEKAK
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
75.3
40.8
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
92.6
0.96
0.6
87.8
22.4
Minor 5ss
39.7
-1.2
2.8
49.5
46.5
Minor BPS
72.6
0.69
1.5
79.27
36.1

Associated Gene:

Gene:
ACBD3
Ensembl Gene ID:
ENSAPLG00000013267
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013825
17449138 - 17464192
15055