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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17487080_17488354_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17487080 - 17488354
Intron Length:
1275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCAG
5'SS Class:
major
3'SS Sequence:
TTAATTTTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTATTTAATT
Flanking Amino Acid:
TGGVKKPHRYRPGTVALREI
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
60.5
45.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
65.9
0.36
1.2
68.3
41.1
Minor 5ss
35.6
-1.6
3.3
46.7
48.6
Minor BPS
73.7
0.82
1.4
86.11
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024151
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020792
17483778 - 17490147
6370