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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17509427_17509602_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17509427 - 17509602
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAGGC
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACAAAAT
U12 Branch Point Sequence:
TGTGACAAAATT
Flanking Amino Acid:
GLLRDCARRLCIPEESLYVK
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
0.9
62.1
36.9
Major BPS
49.7
-0
1.1
55.6
36
Major PPT
83
0.74
0.8
81.2
36.5
Minor 5ss
25.5
-2.8
3.2
29.5
37.3
Minor BPS
44.8
-0.3
2.1
66.51
44.1

Associated Gene:

Gene:
SDE2
Ensembl Gene ID:
ENSAPLG00000013231
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013778
17509316 - 17518188
8873