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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17509721_17511775_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17509721 - 17511775
Intron Length:
2055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTGCT
5'SS Class:
major
3'SS Sequence:
CTTTTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TAATTCTTGATT
Flanking Amino Acid:
LETRLCGGKGGFGSMLRALG
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.61
1.1
72.6
36.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
88.8
0.87
0.6
88.3
21.4
Minor 5ss
37.8
-1.4
3
51.1
45.4
Minor BPS
71.7
0.77
1.1
80.05
35.8

Associated Gene:

Gene:
SDE2
Ensembl Gene ID:
ENSAPLG00000013231
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013778
17509316 - 17518188
8873