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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17511888_17512476_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
17511888 - 17512476
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGGCAT
5'SS Class:
weak_major
3'SS Sequence:
CTGTAATCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GGCTCTGTAATC
Flanking Amino Acid:
RRLRDVNHEKAMAEWVKQQA
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.1
0.21
1.3
56.5
44.1
Major BPS
100
1.24
0.5
100
0
Major PPT
73.5
0.53
0.9
66.4
39.4
Minor 5ss
27.9
-2.5
3.3
33.8
42
Minor BPS
49.6
-0
2
59.15
40.6

Associated Gene:

Gene:
SDE2
Ensembl Gene ID:
ENSAPLG00000013231
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013778
17509316 - 17518188
8873