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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17512647_17513375_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17512647 - 17513375
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGCAG
5'SS Class:
major
3'SS Sequence:
CTTCCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TGGACTTTGACT
Flanking Amino Acid:
AERLEDSVLKGLQATSSKVV
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
55
43.5
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
84.4
0.77
0.7
80.4
24.8
Minor 5ss
36.3
-1.6
3.2
46.8
48.6
Minor BPS
66.6
0.6
1.3
76.49
40.3

Associated Gene:

Gene:
SDE2
Ensembl Gene ID:
ENSAPLG00000013231
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013778
17509316 - 17518188
8873