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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17514509_17517471_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17514509 - 17517471
Intron Length:
2963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AAGAAAATAATT
Flanking Amino Acid:
AQEMDQSQSTEVEPIDLLAF
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
42.1
-0.5
1.9
56.14
39.3

Associated Gene:

Gene:
SDE2
Ensembl Gene ID:
ENSAPLG00000013231
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013778
17509316 - 17518188
8873