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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17526011_17526176_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17526011 - 17526176
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GCTTCACACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CCTTCCTGATCT
Flanking Amino Acid:
VVYTLDLEDYGGPGDCKDGM
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.8
38.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
65.5
0.35
1
58.3
36.5
Minor 5ss
33.5
-1.9
2.8
34.2
41.4
Minor BPS
60.6
0.41
1.8
76.58
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013740
17524891 - 17528606
3716