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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17526417_17527182_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
17526417 - 17527182
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGTTAT
5'SS Class:
major
3'SS Sequence:
CTCTGACGGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
TTTTCTCTGACG
Flanking Amino Acid:
GTNRTSLIDSRLVPVRESGW
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
75.3
37.4
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
58.7
0.2
1.1
54.1
40.5
Minor 5ss
41
-1
3.2
57.9
46.7
Minor BPS
65.5
0.34
1.7
75.39
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013740
17524891 - 17528606
3716