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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17527427_17528275_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
17527427 - 17528275
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTCC
5'SS Class:
major
3'SS Sequence:
AAAATGTGTGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCAAAA
U12 Branch Point Sequence:
TTGTCCAAAATG
Flanking Amino Acid:
SILRGIPGNADIGGDVLYPD
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.4
36
Major BPS
55.5
0.14
1
61.5
32.5
Major PPT
58.8
0.2
1.1
50.9
46.9
Minor 5ss
38.1
-1.3
3.2
51.4
45.3
Minor BPS
52.2
-0
2
63.96
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013740
17524891 - 17528606
3716