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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17550402_17551502_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
17550402 - 17551502
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
GTCAATGGTGTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTCAA
U12 Branch Point Sequence:
TTTTCTGTCAAT
Flanking Amino Acid:
CSWMTAAFRMHDDEIHDRCG
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
63.3
0.33
1.2
67
39.8
Major PPT
56.7
0.15
1.1
50.1
43.5
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
49.1
0.01
2.5
80.63
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012312
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012891
17544186 - 17570957
26772