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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17551646_17552274_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17551646 - 17552274
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
ATTACGATACTT
Flanking Amino Acid:
LPVNLSGDLLVKDPYSFGRT
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
85
0.79
0.7
84.8
30
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
43.4
-0.4
2.4
67.91
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012312
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012891
17544186 - 17570957
26772