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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17553571_17553974_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17553571 - 17553974
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTCTCAAAATA
Flanking Amino Acid:
KAVTYKEENIVKCTLFITGL
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.3
37
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
45.7
-0.5
2.8
59.9
39.8
Minor BPS
49.9
-0
1.9
69.2
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012312
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012891
17544186 - 17570957
26772