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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17554046_17554487_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17554046 - 17554487
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTTTTCTCACAT
Flanking Amino Acid:
VNQETIRQHFIAAYPSCSVL
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
28.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
83.7
0.76
0.8
80.6
31.4
Minor 5ss
45.3
-0.5
2.8
64.3
39.9
Minor BPS
49.8
0.07
1.9
72.8
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012312
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012891
17544186 - 17570957
26772