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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17558588_17560027_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17558588 - 17560027
Intron Length:
1440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTTGGCA
Flanking Amino Acid:
KYAPYPENICWNNLSVHGFK
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77.7
31.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.2
0.88
0.8
88.3
28.9
Minor 5ss
42.6
-0.8
3.1
56.7
42.1
Minor BPS
47.6
-0.1
3.4
77.15
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012312
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012891
17544186 - 17570957
26772