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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17560182_17560931_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17560182 - 17560931
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTTCCCCAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTCCCCAATT
Flanking Amino Acid:
NVTKPIHYLNNPIISQFFPT
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.2
81.3
32.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
68.3
0.41
0.9
68.4
32.2
Minor 5ss
36.2
-1.6
2.8
45
36
Minor BPS
66.8
0.61
1.9
89.35
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012312
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012891
17544186 - 17570957
26772