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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17562430_17563077_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17562430 - 17563077
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTTA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
ATTATATTAACC
Flanking Amino Acid:
VLILPSLGLTSLDFFFRWLF
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.1
32.2
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
87.2
0.84
0.7
85.1
29
Minor 5ss
39.7
-1.2
3.4
55.3
48.9
Minor BPS
64.6
0.44
1.6
74.74
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012312
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012891
17544186 - 17570957
26772