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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17563141_17564003_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17563141 - 17564003
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TCTTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TTTCCAGTCACT
Flanking Amino Acid:
RESSDSAIRLECVFLPDQGA
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
79
35.3
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
89.7
0.89
0.6
84.8
22.9
Minor 5ss
41.6
-0.9
2.8
51.4
39.2
Minor BPS
47
-0.1
2.6
78.66
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012312
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012891
17544186 - 17570957
26772