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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17564167_17565256_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17564167 - 17565256
Intron Length:
1090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAGAG
5'SS Class:
major
3'SS Sequence:
TCTTCCTTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
AGAGATTTAAGT
Flanking Amino Acid:
STAERKNIKQQQAFEYEFGA
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
60.6
38.2
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
79.8
0.67
0.7
73.1
31.7
Minor 5ss
35.9
-1.6
3.3
46.7
48.7
Minor BPS
47
-0.1
1.9
60.74
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012312
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012891
17544186 - 17570957
26772