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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17565363_17566657_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17565363 - 17566657
Intron Length:
1295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAG
U12 Branch Point Sequence:
TCTTCCTTTTTT
Flanking Amino Acid:
SITCPIIVPFGLIYILLKHM
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
63.4
0.33
1.6
73.6
41.8
Major PPT
92.7
0.96
0.6
85.4
29.3
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
46.1
-0.2
3.6
79.54
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012312
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012891
17544186 - 17570957
26772