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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17566826_17569531_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17566826 - 17569531
Intron Length:
2706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
AATATTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTCTGAATA
Flanking Amino Acid:
WLYFFSFLRLGFKAPTSMFT
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
78.8
38.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.2
0.57
0.9
66.7
44.1
Minor 5ss
49.3
-0
2.8
65.3
45.9
Minor BPS
71.3
0.66
1.3
78.35
31.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012312
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012891
17544186 - 17570957
26772