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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17574794_17575240_R

Intron Information:

Intron Rank:
147640
Intron Class:
major
Intron Phase:
Intron Coordinates:
17574794 - 17575240
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATATCCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TCCTGCTGCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
83.2
30.8
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
76.7
0.6
0.9
66.9
39.6
Minor 5ss
32.5
-2
3.1
41.3
45.3
Minor BPS
45.7
-0.3
2.3
59.45
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026773
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044322
17574297 - 17575465
1169