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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17637960_17643452_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17637960 - 17643452
Intron Length:
5493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTCTTTTTACCT
Flanking Amino Acid:
MSSSSFGKMMVQHSGQ
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.8
35.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
88.4
0.86
0.7
85.7
28.6
Minor 5ss
34.9
-1.7
3.2
42.4
44.3
Minor BPS
60.3
0.4
1.6
74.22
43.6

Associated Gene:

Gene:
ATF3
Ensembl Gene ID:
ENSAPLG00000012304
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012806
17637940 - 17645517
7578