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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17685547_17689370_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17685547 - 17689370
Intron Length:
3824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCTCTTTTGATT
Flanking Amino Acid:
QSMKAEQEMLKLYQPVVTPE
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
86.3
0.82
0.8
80.8
36.4
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
63.4
0.5
1.2
75.19
36.2

Associated Gene:

Gene:
NSL1
Ensembl Gene ID:
ENSAPLG00000024285
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027601
17681254 - 17692904
11651