Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17689502_17691993_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17689502 - 17691993

Intron Length:

2492

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTACGTGGG

5'SS Class:

major

3'SS Sequence:

TTGGCATTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAC

U12 Branch Point Sequence:

GTTACCATAACT

Flanking Amino Acid:

GDASASSEPCGSYIKILEDQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

1.1

58.5

46.4

Major BPS

71.4

0.53

1.2

63.4

Major PPT

73.4

0.53

0.9

70.5

40.2

Minor 5ss

31.5

-2.1

3.3

40.2

45.9

Minor BPS

70.6

0.72

1.7

87.23

37.4

Associated Gene:

Gene:

NSL1

Ensembl Gene ID:

ENSAPLG00000024285

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027601

17681254 - 17692904

11651