About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17692639_17692741_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17692639 - 17692741
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGA
5'SS Class:
strong_major
3'SS Sequence:
CCGGCTGTGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAG
U12 Branch Point Sequence:
TCTTCAGCACCT
Flanking Amino Acid:
LAAVVRAAEEAAVAALVVVA
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.7
41.7
Major BPS
63.4
0.33
1.6
73.6
41.8
Major PPT
58.1
0.18
1.1
52.8
41.5
Minor 5ss
24.7
-2.9
3
29.8
43.1
Minor BPS
42.7
-0.4
2.5
69.07
47.4

Associated Gene:

Gene:
TATDN3
Ensembl Gene ID:
ENSAPLG00000011801
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041240
17692468 - 17696663
4196