About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17692639_17693077_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17692639 - 17693077
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
TGCTCCTTCACG
Flanking Amino Acid:
TWRLWCGQQRRFPGFVLPCL
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.7
41.7
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
69.2
0.43
1
61
44.6
Minor 5ss
24.7
-2.9
3
29.8
43.1
Minor BPS
64.6
0.31
1.9
67.9
45.5

Associated Gene:

Gene:
TATDN3
Ensembl Gene ID:
ENSAPLG00000011801
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042325
17691791 - 17696663
4873