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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17694544_17694770_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
17694544 - 17694770
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
TCTTTTCTCTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAG
U12 Branch Point Sequence:
TACTACTGAGTT
Flanking Amino Acid:
RPTINLLKEQGASKVLLHAF
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
59.6
0.24
1.5
57.3
41.7
Major PPT
66.9
0.38
1.7
80.5
31.5
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
48.5
-0
1.9
67.29
43.3

Associated Gene:

Gene:
TATDN3
Ensembl Gene ID:
ENSAPLG00000011801
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012302
17692468 - 17696663
4196
ENSAPLT00000042325
17691791 - 17696663
4873
ENSAPLT00000041240
17692468 - 17696663
4196