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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17694884_17696065_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17694884 - 17696065
Intron Length:
1182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTGTCTTTATTT
Flanking Amino Acid:
IPPSIIRSEQKQKLVKQLPL
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.1
81.6
33.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77.6
0.62
1
76.2
37.8
Minor 5ss
49.4
-0
2.9
73.9
42.6
Minor BPS
62.5
0.47
1.6
74.92
43

Associated Gene:

Gene:
TATDN3
Ensembl Gene ID:
ENSAPLG00000011801
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042325
17691791 - 17696663
4873
ENSAPLT00000041240
17692468 - 17696663
4196
ENSAPLT00000012302
17692468 - 17696663
4196