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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17696147_17696471_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17696147 - 17696471
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TATAATTTGATA
Flanking Amino Acid:
DSPALGPEKQVRNEPKNIYI
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
54
0.12
1.5
64.64
35.3

Associated Gene:

Gene:
TATDN3
Ensembl Gene ID:
ENSAPLG00000011801
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042325
17691791 - 17696663
4873
ENSAPLT00000041240
17692468 - 17696663
4196
ENSAPLT00000012302
17692468 - 17696663
4196