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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17711776_17713915_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17711776 - 17713915
Intron Length:
2140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TCTTGCTTTACA
Flanking Amino Acid:
ACAVAVLGNQLGTAIGFLVP
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
85.9
0.81
0.8
79.7
32.4
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
60.9
0.34
2.1
75.18
42.3

Associated Gene:

Gene:
FLVCR1
Ensembl Gene ID:
ENSAPLG00000011448
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011941
17710955 - 17721804
10850