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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17714061_17714622_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17714061 - 17714622
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATCTTTTTATTT
Flanking Amino Acid:
STLLFFLTGVVFEEKPKYPP
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.8
83.1
28.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.4
0.77
0.8
77.5
36.5
Minor 5ss
33.3
-1.9
3.4
45.9
43.7
Minor BPS
59.2
0.37
1.5
72.97
39.1

Associated Gene:

Gene:
FLVCR1
Ensembl Gene ID:
ENSAPLG00000011448
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011941
17710955 - 17721804
10850