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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17716771_17717273_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17716771 - 17717273
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACCCAT
U12 Branch Point Sequence:
TTTTCTTCAACA
Flanking Amino Acid:
IIVFVTGGVLGFFMTGYLPL
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
83.1
30.9
Major BPS
55.7
0.14
1.2
64.4
33.7
Major PPT
84.5
0.78
0.8
81.6
28.9
Minor 5ss
31.5
-2.1
2.7
34
41.5
Minor BPS
78.6
0.89
1.4
87.68
29.9

Associated Gene:

Gene:
FLVCR1
Ensembl Gene ID:
ENSAPLG00000011448
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011941
17710955 - 17721804
10850