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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17717380_17717585_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17717380 - 17717585
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTATATCA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TACTGATGAAGA
Flanking Amino Acid:
SSGLLNASAQIFGIVFTLVQ
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
65.4
34.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
92.1
0.95
0.5
89.1
19.9
Minor 5ss
34.7
-1.7
2.8
41.3
44.6
Minor BPS
42.2
-0.5
2.2
54.47
43.8

Associated Gene:

Gene:
FLVCR1
Ensembl Gene ID:
ENSAPLG00000011448
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011941
17710955 - 17721804
10850